STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctMTRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786. (427 aa)    
Predicted Functional Partners:
DVU_0706
TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
 0.986
dctP
TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.985
DVU_2822
TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.960
DVU_0011
TRAP transporter solute receptor DctP; Identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.954
DVU_0010
TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290.
 
 
 0.941
DVU_2823
TRAP transporter, DctMQ subunit; Identified by similarity to GP:12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786.
 
 
0.726
sucCD
succinyl-CoA synthase, beta/alpha subunits; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
  
 0.598
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
      
 0.559
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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