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dctP protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"dctP" - TRAP transporter solute receptor DctP in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctPTRAP transporter solute receptor DctP; Identified by similarity to SP-P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 (338 aa)    
Predicted Functional Partners:
dctM
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786 (427 aa)
   
  0.954
DVU_0706
TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290 (156 aa)
 
   
  0.936
DVU_2823
TRAP transporter, DctMQ subunit; Identified by similarity to GP-12722118; match to protein family HMM PF00597; match to protein family HMM PF04290; match to protein family HMM TIGR00786 (591 aa)
   
  0.876
DVU_0009
TRAP transporter, DctM subunit; Identified by match to protein family HMM PF00597; match to protein family HMM TIGR00786 (426 aa)
   
  0.852
DVU_0010
TRAP transporter, DctQ subunit; Identified by match to protein family HMM PF04290 (188 aa)
 
   
  0.809
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy (123 aa)
           
  0.534
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
           
  0.520
DVU_0709
Uncharacterized protein; Identified by Glimmer2; putative (86 aa)
              0.504
DVU_0708
Uncharacterized protein; Identified by Glimmer2; putative (50 aa)
              0.504
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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