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DVU_0717 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0717" - GGDEF domain/EAL domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0717GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (502 aa)    
Predicted Functional Partners:
DVU_0187
GGDEF domain protein; Identified by similarity to SP-P76237; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (363 aa)
 
 
  0.843
DVU_2067
GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (373 aa)
 
 
  0.717
DVU_3106
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (655 aa)
 
0.688
DVU_3068
GAF domain/sensory box/EAL domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 (827 aa)
 
 
 
0.680
DVU_1959
EAL domain/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (797 aa)
 
 
 
0.658
DVU_3180
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (833 aa)
 
 
 
0.645
DVU_2570
GGDEF domain/HAMP domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (550 aa)
 
0.645
DVU_1805
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (487 aa)
 
 
0.645
DVU_0416
GGDEF domain protein; Identified by similarity to GP-1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (372 aa)
 
 
0.640
DVU_2954
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (559 aa)
 
 
 
0.634
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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