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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0747ABC transporter, ATP-binding protein; Identified by similarity to OMNI:CC1598; match to protein family HMM PF00005. (212 aa)    
Predicted Functional Partners:
DVU_0746
ABC transporter, permease protein; Identified by similarity to GP:20906056; match to protein family HMM PF00528.
 
 
  0.983
DVU_3163
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01LI0216; match to protein family HMM PF00528.
  
 
 0.955
DVU_3164
ABC transporter, permease protein; Identified by similarity to OMNI:TM0598; match to protein family HMM PF00528.
  
 
 0.936
DVU_0484
ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.
  
0.933
DVU_3162
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547.
  
 
 0.916
DVU_1671
ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
0.892
DVU_0745
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to GP:14330288; match to protein family HMM PF01547.
 
  
  0.891
DVU_2576
Oligopeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42064; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
  
0.880
DVU_0978
ABC transporter, periplasmic substrate-binding protein, putative; Identified by similarity to GP:14330288.
 
 
  0.878
DVU_0166
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.820
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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