STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0751Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by similarity to OMNI:NTL03PA02202; similar to OMNI:NTL03PA04194; match to protein family HMM PF00528; match to protein family HMM TIGR01726. (596 aa)    
Predicted Functional Partners:
DVU_0753
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
 
 0.952
DVU_0752
Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497.
 
 0.930
DVU_2343
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.922
DVU_0105
Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.
 
 
 0.909
DVU_0968
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.906
DVU_1236
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005.
 
 
 0.903
DVU_1238
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P30859; match to protein family HMM PF00497.
 
 0.865
glnH
Glutamine ABC transporter, periplasmic glutamine-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 0.843
DVU_2342
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
 0.840
DVU_0388
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.834
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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