Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0772Hypothetical protein; Identified by Glimmer2; putative. (115 aa)    
Predicted Functional Partners:
fur-2
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
  
  
 0.858
DVU_2318
Rubrerythrin, putative; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.
  
  
 0.857
DVU_0024
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0251.
   
    0.846
DVU_2247
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
   
    0.846
DVU_3352
Lipoprotein, putative.
  
    0.779
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
  
     0.772
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.768
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.748
dsvD
Dissimilatory sulfite reductase B; May play an essential role in dissimilatory sulfite reduction.
 
    0.742
qrcD
Molybdopterin oxidoreductase, transmembrane subunit, putative; Component of the respiratory Qrc complex, that catalyzes the reduction of the menaquinone pool using electrons transferred from the reduced periplasmic cytochrome c3, and which is probably involved in sulfate respiration. Is likely essential for growth on H(2) or formate since the periplasmic hydrogenases and/or formate dehydrogenases act as primary electron donors for the Qrc complex. The QrcD subunit anchors the protein complex to the membrane and likely interacts with the quinone pool.
  
    0.735
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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