Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0790Radical SAM protein, TIGR01212 family; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212. (351 aa)    
Predicted Functional Partners:
mreB-1
Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM TIGR00904.
  
    0.682
DVU_0791
methylated-DNA--protein-cysteine methyltransferase, DNA-binding domain protein; Identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589.
       0.665
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.651
DVU_0786
Penicillin-binding protein; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717.
       0.647
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.644
DVU_0787
Hypothetical protein; Identified by Glimmer2; putative.
       0.642
DVU_0792
Conserved domain protein.
  
    0.574
DVU_0784
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0780; match to protein family HMM PF04519.
  
    0.518
DVU_0277
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
   
    0.433
DVU_0762
Conserved hypothetical protein; Identified by similarity to SP:Q8XBS4.
   
    0.433
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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