DVU_0827 protein (Desulfovibrio vulgaris Hildenborough)

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DVU_0827

Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. (471 aa)

Predicted Functional Partners:

DVU_3028

0.992

DVU_1412

0.924

glcD

0.918

DVU_0826

0.916

glcB

0.914

DVU_0130

0.905

DVU_1358

0.905

DVU_2364

0.905

DVU_3121

0.905

smpB

0.766

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0130	DVU_0827	DVU_0130	DVU_0827	Phosphoglycolate phosphatase, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.905
DVU_0130	DVU_1358	DVU_0130	DVU_1358	Phosphoglycolate phosphatase, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	Hydrolase, haloacid dehalogenase-like family; Identified by match to protein family HMM PF00702.	0.920
DVU_0130	DVU_1412	DVU_0130	DVU_1412	Phosphoglycolate phosphatase, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.904
DVU_0130	DVU_3028	DVU_0130	DVU_3028	Phosphoglycolate phosphatase, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.901
DVU_0130	glcD	DVU_0130	DVU_3027	Phosphoglycolate phosphatase, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	Glycolate oxidase, subunit GlcD; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.905
DVU_0826	DVU_0827	DVU_0826	DVU_0827	Glycolate oxidase, iron-sulfur subunit, putative; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.916
DVU_0826	DVU_3028	DVU_0826	DVU_3028	Glycolate oxidase, iron-sulfur subunit, putative; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.460
DVU_0826	glcD	DVU_0826	DVU_3027	Glycolate oxidase, iron-sulfur subunit, putative; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.	Glycolate oxidase, subunit GlcD; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.823
DVU_0826	smpB	DVU_0826	DVU_0828	Glycolate oxidase, iron-sulfur subunit, putative; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	0.485
DVU_0827	DVU_0130	DVU_0827	DVU_0130	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Phosphoglycolate phosphatase, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	0.905
DVU_0827	DVU_0826	DVU_0827	DVU_0826	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Glycolate oxidase, iron-sulfur subunit, putative; Identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754.	0.916
DVU_0827	DVU_1358	DVU_0827	DVU_1358	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Hydrolase, haloacid dehalogenase-like family; Identified by match to protein family HMM PF00702.	0.905
DVU_0827	DVU_1412	DVU_0827	DVU_1412	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.924
DVU_0827	DVU_2364	DVU_0827	DVU_2364	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155.	0.905
DVU_0827	DVU_3028	DVU_0827	DVU_3028	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.992
DVU_0827	DVU_3121	DVU_0827	DVU_3121	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	0.905
DVU_0827	glcB	DVU_0827	DVU_0701	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	0.914
DVU_0827	glcD	DVU_0827	DVU_3027	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	Glycolate oxidase, subunit GlcD; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.918
DVU_0827	smpB	DVU_0827	DVU_0828	Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	0.766
DVU_1358	DVU_0130	DVU_1358	DVU_0130	Hydrolase, haloacid dehalogenase-like family; Identified by match to protein family HMM PF00702.	Phosphoglycolate phosphatase, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549.	0.920

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