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rnj protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"rnj" - Ribonuclease J in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rnjRibonuclease J; An RNase that has 5’-3’ exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily (554 aa)    
Predicted Functional Partners:
DVU_0877
Uncharacterized protein; Identified by Glimmer2; putative (47 aa)
              0.845
DVU_1700
Identified by match to protein family HMM PF00753 (415 aa)
   
   
 
0.824
DVU_0875
Identified by match to protein family HMM PF01557 (259 aa)
              0.815
DVU_0786
Penicillin-binding protein; Identified by similarity to SP-P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 (595 aa)
            0.755
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (266 aa)
   
        0.745
DVU_0881
Translation elongation factor G, putative; Identified by similarity to SP-P13551; similar to GP-15988476; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231 (688 aa)
 
   
  0.547
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor (330 aa)
            0.501
rluB
Pseudouridine synthase; Identified by similarity to SP-P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family (267 aa)
   
        0.501
tsf
Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (287 aa)
 
          0.498
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP (238 aa)
 
   
  0.472
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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