DVU_0896 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0896	DVU_0897	DVU_0896	DVU_0897	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	0.773
DVU_0896	DVU_0898	DVU_0896	DVU_0898	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	0.550
DVU_0896	DVU_0899	DVU_0896	DVU_0899	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; Belongs to the RemA family.	0.547
DVU_0896	DVU_2517	DVU_0896	DVU_2517	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01HP00646.	0.531
DVU_0896	DVU_3374	DVU_0896	DVU_3374	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Permease, putative; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.574
DVU_0896	cyf	DVU_0896	DVU_1817	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Cytochrome c-553; Natural electron acceptor for a formate dehydrogenase.	0.491
DVU_0896	ftsE	DVU_0896	DVU_3375	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Cell division ATP-binding protein FtsE, putative; Part of the ABC transporter FtsEX involved in cellular division.	0.520
DVU_0896	gmk	DVU_0896	DVU_0900	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.572
DVU_0896	pyrF	DVU_0896	DVU_0901	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.	0.547
DVU_0896	recD2	DVU_0896	DVU_0895	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.	0.787
DVU_0897	DVU_0896	DVU_0897	DVU_0896	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	0.773
DVU_0897	DVU_0898	DVU_0897	DVU_0898	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	0.702
DVU_0897	DVU_0899	DVU_0897	DVU_0899	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; Belongs to the RemA family.	0.652
DVU_0897	gmk	DVU_0897	DVU_0900	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.676
DVU_0897	pyrF	DVU_0897	DVU_0901	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.	0.671
DVU_0897	recD2	DVU_0897	DVU_0895	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.	0.764
DVU_0898	DVU_0896	DVU_0898	DVU_0896	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	0.550
DVU_0898	DVU_0897	DVU_0898	DVU_0897	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	0.702
DVU_0898	DVU_0899	DVU_0898	DVU_0899	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; Belongs to the RemA family.	0.953
DVU_0898	gmk	DVU_0898	DVU_0900	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.962

page 1 of 3

Server load: low (14%) [HD]

Share

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About