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DVU_0897 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0897" - RNA modification enzyme, MiaB-family in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0897RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089 (458 aa)    
Predicted Functional Partners:
recD2
ATP-dependent RecD-like DNA helicase; DNA-dependent ATPase and ATP-dependent 5’-3’ DNA helicase. Has no activity on blunt DNA or DNA with 3’-overhangs, requires at least 10 bases of 5’-ssDNA for helicase activity (742 aa)
   
   
  0.853
DVU_0896
Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877 (464 aa)
              0.845
pyrF
Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily (235 aa)
   
        0.749
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (207 aa)
   
        0.730
DVU_0898
Uncharacterized protein; Identified by similarity to OMNI-NTL01BH2517; match to protein family HMM TIGR00255 (293 aa)
   
        0.718
DVU_0899
UPF0296 protein DVU_0899; Identified by similarity to OMNI-NTL01BH2516; match to protein family HMM PF04025; Belongs to the UPF0296 family (86 aa)
              0.709
DVU_0394
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (340 aa)
 
        0.584
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515 (285 aa)
   
        0.576
ribAB
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family (409 aa)
   
   
  0.570
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (377 aa)
         
  0.556
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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