DVU_0897 protein (Desulfovibrio vulgaris Hildenborough)

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DVU_0897

RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089. (458 aa)

Predicted Functional Partners:

DVU_0896

0.773

recD2

0.764

DVU_0898

0.702

rlmN

0.686

gmk

0.676

pyrF

0.671

DVU_0899

0.652

DVU_3057

0.607

DVU_0665

0.555

aroC

0.529

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0665	DVU_0897	DVU_0665	DVU_0897	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	0.555
DVU_0665	DVU_3057	DVU_0665	DVU_3057	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	Oxygen-independent coproporphyrinogen III oxidase, putative; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.491
DVU_0896	DVU_0897	DVU_0896	DVU_0897	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	0.773
DVU_0896	DVU_0898	DVU_0896	DVU_0898	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	0.550
DVU_0896	DVU_0899	DVU_0896	DVU_0899	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; Belongs to the RemA family.	0.547
DVU_0896	aroC	DVU_0896	DVU_0894	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.	0.472
DVU_0896	gmk	DVU_0896	DVU_0900	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.572
DVU_0896	pyrF	DVU_0896	DVU_0901	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.	0.547
DVU_0896	recD2	DVU_0896	DVU_0895	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.	0.787
DVU_0897	DVU_0665	DVU_0897	DVU_0665	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.	0.555
DVU_0897	DVU_0896	DVU_0897	DVU_0896	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	0.773
DVU_0897	DVU_0898	DVU_0897	DVU_0898	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	0.702
DVU_0897	DVU_0899	DVU_0897	DVU_0899	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; Belongs to the RemA family.	0.652
DVU_0897	DVU_3057	DVU_0897	DVU_3057	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Oxygen-independent coproporphyrinogen III oxidase, putative; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.607
DVU_0897	aroC	DVU_0897	DVU_0894	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.	0.529
DVU_0897	gmk	DVU_0897	DVU_0900	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.676
DVU_0897	pyrF	DVU_0897	DVU_0901	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.	0.671
DVU_0897	recD2	DVU_0897	DVU_0895	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.	0.764
DVU_0897	rlmN	DVU_0897	DVU_2904	RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089.	Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.686
DVU_0898	DVU_0896	DVU_0898	DVU_0896	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.	Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877.	0.550

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