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DVU_0898 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0898" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0898Uncharacterized protein; Identified by similarity to OMNI-NTL01BH2517; match to protein family HMM TIGR00255 (293 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (207 aa)
   
   
  0.912
DVU_0899
UPF0296 protein DVU_0899; Identified by similarity to OMNI-NTL01BH2516; match to protein family HMM PF04025; Belongs to the UPF0296 family (86 aa)
 
          0.902
pyrF
Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily (235 aa)
              0.886
DVU_0897
RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089 (458 aa)
   
        0.718
recD2
ATP-dependent RecD-like DNA helicase; DNA-dependent ATPase and ATP-dependent 5’-3’ DNA helicase. Has no activity on blunt DNA or DNA with 3’-overhangs, requires at least 10 bases of 5’-ssDNA for helicase activity (742 aa)
              0.692
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515 (285 aa)
              0.659
DVU_0903
HD domain protein; Identified by similarity to GP-21107347; match to protein family HMM PF01966 (285 aa)
              0.654
DVU_0896
Lipoprotein, NLP/P60 family; Identified by match to protein family HMM PF00877 (464 aa)
              0.604
recJ
Single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 (571 aa)
   
        0.598
sun
Sun protein; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (507 aa)
 
        0.466
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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