STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0902TPR domain protein; Identified by match to protein family HMM PF00515. (285 aa)    
Predicted Functional Partners:
DVU_2077
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.
 
    0.779
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
 
     0.777
DVU_0903
HD domain protein; Identified by similarity to GP:21107347; match to protein family HMM PF01966.
  
    0.775
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.775
DVU_1447
CgeB family protein.
 
     0.774
DVU_1464
Identified by match to protein family HMM PF01075.
  
     0.774
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.774
DVU_3227
Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.774
DVU_0318
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.773
DVU_0311
Flagellar assembly protein FliH, putative; Identified by similarity to SP:P31068.
 
   
 0.768
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.