Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
TPR domain protein; Identified by match to protein family HMM PF00515 (285 aa)
Predicted Functional Partners:
Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily (235 aa)
HD domain protein; Identified by similarity to GP-21107347; match to protein family HMM PF01966 (285 aa)
Uncharacterized protein; Identified by similarity to OMNI-NTL02MA3501; match to protein family HMM PF03130 (642 aa)
annotation not available (227 aa)
Uncharacterized protein; Identified by Glimmer2; putative (140 aa)
Uncharacterized protein; Identified by Glimmer2; putative (169 aa)
Uncharacterized protein; Identified by Glimmer2; putative (138 aa)
Uncharacterized protein; Identified by Glimmer2; putative (201 aa)
Uncharacterized protein; Identified by Glimmer2; putative (154 aa)
Uncharacterized protein; Identified by Glimmer2; putative (192 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough