Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0902TPR domain protein; Identified by match to protein family HMM PF00515. (285 aa)    
Predicted Functional Partners:
DVU_2077
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.
 
    0.785
DVU_0318
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.776
DVU_1445
Flagellar hook-length control domain protein; Identified by match to protein family HMM PF02120.
 
     0.776
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.775
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.775
DVU_3227
Flagellar basal body-associated protein, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.775
DVU_1447
CgeB family protein.
 
     0.774
DVU_1464
Identified by match to protein family HMM PF01075.
  
     0.774
DVU_0903
HD domain protein; Identified by similarity to GP:21107347; match to protein family HMM PF01966.
       0.773
DVU_0519
Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
 
   
 0.769
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (22%) [HD]