STRINGSTRING
DVU_0903 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0903" - HD domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0903HD domain protein; Identified by similarity to GP-21107347; match to protein family HMM PF01966 (285 aa)    
Predicted Functional Partners:
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515 (285 aa)
              0.886
recJ
Single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 (571 aa)
              0.754
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (207 aa)
              0.659
DVU_0899
UPF0296 protein DVU_0899; Identified by similarity to OMNI-NTL01BH2516; match to protein family HMM PF04025; Belongs to the UPF0296 family (86 aa)
              0.658
pyrF
Orotidine 5’-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5’- monophosphate (OMP) to uridine 5’-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily (235 aa)
              0.656
DVU_0898
Uncharacterized protein; Identified by similarity to OMNI-NTL01BH2517; match to protein family HMM TIGR00255 (293 aa)
              0.654
DVU_0897
RNA modification enzyme, MiaB-family; Identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089 (458 aa)
              0.544
DVU_3266
annotation not available (263 aa)
   
          0.403
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (9%) [HD]