Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0903HD domain protein; Identified by similarity to GP:21107347; match to protein family HMM PF01966. (285 aa)    
Predicted Functional Partners:
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515.
       0.773
DVU_0940
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
      0.772
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
       0.606
DVU_1862
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
      0.566
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.543
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.531
DVU_0898
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2517; match to protein family HMM TIGR00255.
       0.501
DVU_0899
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2516; match to protein family HMM PF04025; Belongs to the RemA family.
       0.501
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.501
pyrF
Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.490
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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