Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0940GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (243 aa)    
Predicted Functional Partners:
DVU_3123
HD domain protein; Identified by match to protein family HMM PF01966.
 
  
 0.941
DVU_1181
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277.
 
  
 0.931
DVU_0457
EAL domain protein; Identified by match to protein family HMM PF00563.
  
 0.927
DVU_0666
HD domain protein; Identified by match to protein family HMM PF01966.
 
 0.926
DVU_0722
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
 
 
  
 0.910
DVU_0111
Response regulator; Identified by match to protein family HMM PF00072.
 
  
 0.908
phoB
Phosphate regulon transcriptional regulator PhoB; Identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
  
 0.902
DVU_0491
HDIG domain protein; Identified by similarity to OMNI:NTL01RS2515; match to protein family HMM PF01966; match to protein family HMM TIGR00277.
 
 0.901
DVU_0129
Sensory box/HDIG domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277.
 
 0.887
DVU_2933
Response regulator/sensory box/HDIG domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00277.
 
 0.887
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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