STRINGSTRING
DVU_0948 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0948" - annotation not available in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0948annotation not available (142 aa)    
Predicted Functional Partners:
DVU_0949
Conserved domain protein; Identified by similarity to OMNI-NMB1475 (253 aa)
 
          0.921
DVU_2769
Uncharacterized protein; Identified by similarity to OMNI-NTL01FN1523 (260 aa)
 
   
    0.873
DVU_1072
Uncharacterized protein; Identified by similarity to OMNI-BR1366 (220 aa)
   
   
    0.873
DVU_3323
ABC transporter, permease protein; Identified by match to protein family HMM PF02687 (488 aa)
         
  0.642
DVU_2041
Uncharacterized protein; Identified by similarity to GP-20095150 (331 aa)
   
          0.618
DVU_2032
ERF family protein; Identified by match to protein family HMM PF04404 (237 aa)
   
          0.556
DVU_3212
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852 (569 aa)
       
      0.520
DVU_3041
Cytochrome c553; Identified by similarity to SP-P00120; match to protein family HMM PF00034 (93 aa)
       
      0.520
DVU_1968
annotation not available (413 aa)
       
      0.520
cyf
Cytochrome c-553; Natural electron acceptor for a formate dehydrogenase (103 aa)
       
      0.520
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (18%) [HD]