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lptD protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"lptD" - LPS-assembly protein LptD in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
lptDLPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (764 aa)    
Predicted Functional Partners:
DVU_1663
Permease, putative; Identified by match to protein family HMM PF03739 (360 aa)
 
 
  0.840
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (791 aa)
 
 
  0.782
DVU_1662
Permease, putative; Identified by match to protein family HMM PF03739 (380 aa)
 
 
  0.765
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (260 aa)
 
 
  0.740
DVU_1435
Membrane protein, putative; Identified by similarity to OMNI-NTL03PA01784 (394 aa)
   
   
  0.723
DVU_0335
3-deoxy-D-manno-octulosonic-acid transferase, putative; Identified by similarity to GP-17221411 (530 aa)
 
   
  0.689
DVU_2931
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; match to protein family HMM TIGR01369 (733 aa)
   
          0.683
DVU_3352
annotation not available (189 aa)
   
          0.673
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids; Belongs to the alanine racemase family (376 aa)
   
        0.672
DVU_1901
Peptidylprolyl isomerase; Identified by match to protein family HMM PF00639 (348 aa)
   
   
  0.644
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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