DVU_0967 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DVU_0967

Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; Belongs to the binding-protein-dependent transport system permease family. (337 aa)

Predicted Functional Partners:

DVU_0966

0.988

DVU_0968

0.987

glnH

0.975

DVU_1238

0.974

DVU_0386

0.946

DVU_2343

0.909

DVU_0105

0.907

DVU_0753

0.903

DVU_1236

0.901

DVU_0388

0.888

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0105	DVU_0386	DVU_0105	DVU_0386	Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.651
DVU_0105	DVU_0966	DVU_0105	DVU_0966	Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.657
DVU_0105	DVU_0967	DVU_0105	DVU_0967	Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; Belongs to the binding-protein-dependent transport system permease family.	0.907
DVU_0105	DVU_1238	DVU_0105	DVU_1238	Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P30859; match to protein family HMM PF00497.	0.729
DVU_0105	glnH	DVU_0105	DVU_0107	Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.	Glutamine ABC transporter, periplasmic glutamine-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	0.979
DVU_0386	DVU_0105	DVU_0386	DVU_0105	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.	0.651
DVU_0386	DVU_0388	DVU_0386	DVU_0388	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.989
DVU_0386	DVU_0753	DVU_0386	DVU_0753	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.	0.516
DVU_0386	DVU_0967	DVU_0386	DVU_0967	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; Belongs to the binding-protein-dependent transport system permease family.	0.946
DVU_0386	DVU_0968	DVU_0386	DVU_0968	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.546
DVU_0386	DVU_1236	DVU_0386	DVU_1236	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52815; match to protein family HMM PF00005.	0.582
DVU_0386	DVU_2343	DVU_0386	DVU_2343	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.549
DVU_0388	DVU_0386	DVU_0388	DVU_0386	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.989
DVU_0388	DVU_0966	DVU_0388	DVU_0966	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.567
DVU_0388	DVU_0967	DVU_0388	DVU_0967	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; Belongs to the binding-protein-dependent transport system permease family.	0.888
DVU_0388	DVU_1238	DVU_0388	DVU_1238	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P30859; match to protein family HMM PF00497.	0.643
DVU_0388	glnH	DVU_0388	DVU_0107	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Glutamine ABC transporter, periplasmic glutamine-binding protein; Identified by similarity to SP:P10344; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.	0.618
DVU_0753	DVU_0386	DVU_0753	DVU_0386	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.516
DVU_0753	DVU_0966	DVU_0753	DVU_0966	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.600
DVU_0753	DVU_0967	DVU_0753	DVU_0967	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.	Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; Belongs to the binding-protein-dependent transport system permease family.	0.903

page 1 of 4

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About