Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0969Efflux protein, LysE family; Identified by similarity to OMNI:CC0456; match to protein family HMM PF01810. (248 aa)    
Predicted Functional Partners:
DVU_0970
Lipoprotein, putative.
  
    0.794
DVU_0971
Molybdenum cofactor biosynthesis protein; Identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177.
  
    0.491
DVU_0967
Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; Belongs to the binding-protein-dependent transport system permease family.
       0.423
DVU_0968
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.423
iciA
Chromosome initiation inhibitor; Identified by similarity to SP:P24194; match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
  
 0.412
DVU_3074
Membrane protein, putative; Identified by similarity to OMNI:VC0081; match to protein family HMM PF00892.
 
  
 0.403
DVU_2086
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
   
 0.401
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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