Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_0980DAK2 domain protein; Identified by match to protein family HMM PF02734. (210 aa)    
Predicted Functional Partners:
DVU_0979
DAK1 domain protein; Identified by match to protein family HMM PF02733.
 0.999
DVU_0981
Multiphosphoryl transfer protein, putative; Identified by similarity to SP:P23388; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF03610; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family.
 
 
 0.997
DVU_3132
Glycerol-3-phosphate dehydrogenase, FAD-dependent; Identified by similarity to SP:P18158; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.826
DVU_1940
Anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative; Identified by similarity to SP:P13032; match to protein family HMM PF01266.
  
 
 0.819
DVU_2673
Anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation; Identified by similarity to SP:P13032; match to protein family HMM PF01266.
  
 
 0.819
DVU_1939
Anaerobic glycerol-3-phosphate dehydrogenase, B subunit, putative; Identified by similarity to SP:P13033.
  
 
 0.809
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)+); Identified by similarity to SP:P37606; match to protein family HMM PF01210; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.809
argG
Argininosuccinate synthase; Identified by similarity to GP:20150951; match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
   0.475
DVU_3133
Glycerol uptake facilitator protein; Identified by similarity to SP:P18156; match to protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
  
 0.459
ptsI
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
 
  
 0.439
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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