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DVU_0982 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0982" - PHP domain protein in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0982PHP domain protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811 (219 aa)    
Predicted Functional Partners:
DVU_0983
Uncharacterized protein; Identified by similarity to SP-Q50604; match to protein family HMM PF02577 (181 aa)
   
        0.888
miaB
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine (449 aa)
              0.886
DVU_0985
Uncharacterized protein; Identified by Glimmer2; putative (85 aa)
              0.629
DVU_1097
Uncharacterized protein; Identified by similarity to OMNI-NTL01MM2648 (249 aa)
   
          0.584
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
         
  0.545
DVU_2938
Uncharacterized protein; Identified by similarity to OMNI-NTL01NS1696; match to protein family HMM PF01837 (390 aa)
   
          0.519
DVU_0538
Identified by match to protein family HMM PF01261 (262 aa)
 
          0.455
DVU_1434
Uncharacterized protein; Identified by Glimmer2; putative (121 aa)
   
          0.414
DVU_1931
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037 (147 aa)
   
     
  0.410
DVU_1653
Identified by similarity to SP-P42977; match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272 (904 aa)
   
   
  0.400
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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