Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1002Conserved domain protein; Identified by match to protein family HMM PF03692. (151 aa)    
Predicted Functional Partners:
DVU_1001
Identified by match to protein family HMM PF02629.
 
    0.942
DVU_1003
dnaJ domain protein; Identified by match to protein family HMM PF00226.
  
    0.803
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.582
flgD
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.543
DVU_1000
Peptidase, M24 family; Identified by match to protein family HMM PF00557.
  
    0.535
DVU_0843
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.441
DVU_0367
Identified by match to protein family HMM PF00149.
  
     0.439
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.413
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.410
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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