STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1004Membrane protein, putative; Identified by similarity to OMNI:NTL01PH00071; match to protein family HMM PF00892. (294 aa)    
Predicted Functional Partners:
DVU_0947
Membrane protein, putative; Identified by match to protein family HMM PF00892.
 
    0.576
DVU_2088
Membrane protein, putative; Identified by similarity to OMNI:NTL01BH0391; match to protein family HMM PF00892.
 
     0.558
csaA
Chaperone CsaA; Identified by similarity to SP:P37584; match to protein family HMM PF01588.
  
   0.504
DVU_1005
Hypothetical protein; Identified by Glimmer2; putative.
       0.470
DVU_2887
Membrane protein, putative; Identified by similarity to GP:9946975; match to protein family HMM PF00892.
  
    0.466
DVU_1988
Membrane protein, putative; Identified by match to protein family HMM PF04474.
  
    0.427
DVU_3081
Membrane protein, putative; Identified by similarity to GP:9946975; match to protein family HMM PF00892.
 
     0.425
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.