STRINGSTRING
DVU_1006 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1006" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1006Uncharacterized protein; Identified by Glimmer2; putative (149 aa)    
Predicted Functional Partners:
DVU_0399
Uncharacterized protein; Identified by Glimmer2; putative (262 aa)
   
          0.774
DVU_0584
Transposase, putative; Identified by similarity to OMNI-NTL01NM00438 (312 aa)
   
          0.773
DVU_1905
Uncharacterized protein; Identified by Glimmer2; putative (142 aa)
   
          0.770
DVU_0400
Uncharacterized protein; Identified by Glimmer2; putative (183 aa)
   
          0.760
DVU_0742
Uncharacterized protein; Identified by Glimmer2; putative (278 aa)
   
          0.757
DVU_0919
Uncharacterized protein; Identified by Glimmer2; putative (144 aa)
   
          0.756
DVU_3112
TPR domain protein; Identified by match to protein family HMM PF00515 (267 aa)
   
          0.753
DVU_1251
Uncharacterized protein; Identified by Glimmer2; putative (72 aa)
   
          0.748
DVU_0756
TPR domain protein; Identified by match to protein family HMM PF00515 (237 aa)
   
          0.748
DVU_0155
Identified by match to protein family HMM PF01663 (462 aa)
   
          0.744
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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