Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_1012Hemolysin-type calcium-binding repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612. (3038 aa)    
Predicted Functional Partners:
DVU_1013
Type I secretion outer membrane protein, TolC family; Identified by similarity to GP:150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
  
 0.896
DVU_1017
ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 0.840
DVU_1667
Identified by match to protein family HMM PF01580.
   
 
 0.819
DVU_1018
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.811
DVU_1019
Conserved domain protein; Identified by similarity to OMNI:VCA1081.
 
   
 0.783
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
   
 
 0.781
DVU_0725
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MM0619; match to protein family HMM PF03190.
    
 
 0.777
DVU_1011
Hypothetical protein; Identified by Glimmer2; putative.
       0.701
DVU_2815
Outer membrane efflux protein; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
  
 0.626
DVU_0263
Acidic cytochrome c3; Identified by similarity to SP:P94690.
  
 
 0.624
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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