STRINGSTRING
DVU_1013 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1013" - Type I secretion outer membrane protein, TolC family in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1013Type I secretion outer membrane protein, TolC family; Identified by similarity to GP-150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844 (456 aa)    
Predicted Functional Partners:
DVU_1017
ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI-VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664 (776 aa)
 
   
  0.965
DVU_1018
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 (429 aa)
 
 
  0.963
DVU_1012
Hemolysin-type calcium-binding repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612 (3038 aa)
 
   
  0.931
DVU_1019
Conserved domain protein; Identified by similarity to OMNI-VCA1081 (406 aa)
 
          0.820
DVU_3323
ABC transporter, permease protein; Identified by match to protein family HMM PF02687 (488 aa)
   
 
  0.631
DVU_1015
Uncharacterized protein; Identified by Glimmer2; putative (48 aa)
              0.629
DVU_1014
Uncharacterized protein; Identified by Glimmer2; putative (31 aa)
              0.629
yajC
Preprotein translocase, YajC subunit; Identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 (121 aa)
       
 
  0.597
DVU_2437
ABC transporter, permease protein; Identified by similarity to OMNI-NTL01TE1382; match to protein family HMM PF02687 (406 aa)
   
 
  0.593
DVU_2636
Uncharacterized protein; Identified by Glimmer2; putative (389 aa)
   
 
  0.574
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (19%) [HD]