STRINGSTRING
DVU_1022 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1022" - SUF system FeS assembly ATPase SufC, putative in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1022SUF system FeS assembly ATPase SufC, putative; Identified by similarity to OMNI-NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978 (258 aa)    
Predicted Functional Partners:
DVU_1021
Uncharacterized protein; Identified by similarity to OMNI-NTL02MA4295; match to protein family HMM PF01458 (388 aa)
 
  0.999
DVU_0665
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (281 aa)
   
   
  0.752
DVU_1382
HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family (107 aa)
   
 
  0.719
DVU_0359
annotation not available (108 aa)
   
 
  0.719
DVU_0367
Identified by match to protein family HMM PF00149 (244 aa)
   
          0.538
DVU_0883
Glutaredoxin, putative; Identified by match to protein family HMM PF00462 (85 aa)
 
   
  0.475
pyrK
Dihydroorotate dehydrogenase, electron transfer subunit; Identified by similarity to SP-P25983 (272 aa)
   
        0.451
DVU_2475
Oxidoreductase, NAD-binding, putative; Identified by match to protein family HMM PF00175 (280 aa)
   
        0.451
DVU_2399
Hydrogenase, putative; Identified by similarity to GP-21327886; match to protein family HMM PF00175; match to protein family HMM PF00970 (283 aa)
   
        0.451
rluD/coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family (541 aa)
 
        0.421
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (16%) [HD]