STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1056Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity). (273 aa)    
Predicted Functional Partners:
DVU_1057
Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.
 
 0.999
cbiM
Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
 
 0.998
DVU_2769
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1523.
 
  
 0.962
DVU_2889
Identified by match to protein family HMM PF02632.
  
 
 0.913
DVU_1627
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:DR2134; match to protein family HMM PF00005.
 
   
0.847
DVU_1072
Conserved hypothetical protein; Identified by similarity to OMNI:BR1366.
 
    0.802
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
   
0.784
DVU_2888
Cobalt ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:Q05596; match to protein family HMM PF00005.
 
  
0.706
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
  
 0.704
potC
Polyamine ABC transporter, permease protein; Identified by similarity to SP:P23859; match to protein family HMM PF00528.
   
  
 0.602
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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