STRINGSTRING
cbiM protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"cbiM" - Cobalamin biosynthesis protein CbiM in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiMCobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891 (204 aa)    
Predicted Functional Partners:
DVU_1057
Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI-BR1367; match to protein family HMM PF02361 (256 aa)
 
 
  0.998
DVU_1056
Putative ABC transporter ATP-binding protein DVU_1056; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity) (273 aa)
 
 
  0.996
DVU_2769
Uncharacterized protein; Identified by similarity to OMNI-NTL01FN1523 (260 aa)
   
  0.991
DVU_1072
Uncharacterized protein; Identified by similarity to OMNI-BR1366 (220 aa)
 
          0.825
cobL
Precorrin-6Y C5,15-methyltransferase (Decarboxylating); Identified by similarity to SP-P21921; match to protein family HMM PF00590; match to protein family HMM TIGR01468 (486 aa)
 
     
  0.623
DVU_2888
Cobalt ABC transporter, ATP-binding protein, putative; Identified by similarity to SP-Q05596; match to protein family HMM PF00005 (275 aa)
     
 
  0.607
DVU_0747
ABC transporter, ATP-binding protein; Identified by similarity to OMNI-CC1598; match to protein family HMM PF00005 (212 aa)
     
 
  0.604
DVU_0734
Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP-12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469 (503 aa)
         
  0.588
DVU_1059
annotation not available (390 aa)
         
  0.523
DVU_1061
Identified by similarity to SP-P71243; match to protein family HMM PF00534 (353 aa)
              0.456
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (14%) [HD]