STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1072Conserved hypothetical protein; Identified by similarity to OMNI:BR1366. (220 aa)    
Predicted Functional Partners:
DVU_2769
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1523.
 
 
  0.980
DVU_0948
Conserved hypothetical protein.
  
 
  0.907
cbiM
Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
 
    0.829
DVU_1057
Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.
 
    0.804
DVU_1056
Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
    0.802
DVU_1071
Hypothetical protein; Identified by Glimmer2; putative.
       0.592
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
 
    0.589
DVU_3144
Cytochrome c family protein.
  
 
 0.514
nikR
Nickel responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
     0.513
DVU_1073
Conserved domain protein; Identified by similarity to OMNI:NT01MC2073.
  
    0.501
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.