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DVU_1082 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1082" - 3'-5' exonuclease domain protein in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
DVU_10823’-5’ exonuclease domain protein; Identified by match to protein family HMM PF01612 (202 aa)    
Predicted Functional Partners:
DVU_3309
UPF0213 protein DVU_3309; Identified by match to protein family HMM PF01541; Belongs to the UPF0213 family (110 aa)
            0.743
DVU_2246
S1 RNA binding domain protein; Identified by match to protein family HMM PF00575 (723 aa)
   
 
  0.733
DVU_3312
Uncharacterized protein; Identified by similarity to SP-O28974 (151 aa)
 
            0.693
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
   
 
  0.683
DVU_3207
Identified by match to protein family HMM PF00773 (698 aa)
     
 
  0.645
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (886 aa)
     
 
  0.645
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (253 aa)
     
 
  0.621
DVU_1081
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037 (539 aa)
 
          0.607
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (1079 aa)
   
   
  0.602
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (357 aa)
   
 
  0.577
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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