STRINGSTRING
DVU_1100 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1100" - annotation not available in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1100annotation not available (505 aa)    
Predicted Functional Partners:
DVU_1101
Uncharacterized protein; Identified by Glimmer2; putative (218 aa)
              0.850
DVU_1104
annotation not available (243 aa)
 
          0.835
DVU_1099
annotation not available (148 aa)
              0.826
DVU_1102
annotation not available (384 aa)
 
        0.817
DVU_1107
Tail tape measure protein; Identified by similarity to OMNI-NTL01XF00731; match to protein family HMM TIGR01760 (780 aa)
 
   
  0.761
DVU_1266
Uncharacterized protein; Identified by Glimmer2; putative (1145 aa)
   
      0.754
DVU_1545
Hemolysin-type calcium-binding repeat/calx-beta domain protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612 (2414 aa)
   
          0.741
DVU_2898
Uncharacterized protein; Identified by similarity to OMNI-NTL01MM1125 (333 aa)
   
          0.730
DVU_3165
Conserved domain protein; Identified by similarity to GP-19886751 (286 aa)
   
          0.714
DVU_1490
annotation not available (932 aa)
 
     
  0.698
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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