Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_1100Tail fiber protein, putative. (505 aa)    
Predicted Functional Partners:
DVU_1099
Tail fiber assembly protein, putative.
  
  
 0.852
DVU_1490
Tail tape measure protein, putative.
  
  
 0.776
DVU_0213
Conserved domain protein.
 
  
 0.775
DVU_1101
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_2856
Conserved domain protein; Identified by similarity to GP:915377.
 
  
 0.768
DVU_1102
Baseplate assembly protein, putative.
 
     0.757
DVU_1261
Conserved domain protein; Identified by similarity to SP:P45754.
  
    0.681
DVU_0194
Terminase, large subunit, putative; Identified by similarity to GP:6723224.
 
  
 0.649
DVU_2876
Terminase, large subunit, putative; Identified by similarity to GP:13361094.
 
  
 0.645
DVU_0199
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
  
 0.636
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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