STRINGSTRING
DVU_1104 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1104" - annotation not available in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1104annotation not available (243 aa)    
Predicted Functional Partners:
DVU_1102
annotation not available (384 aa)
 
     
  0.967
DVU_1107
Tail tape measure protein; Identified by similarity to OMNI-NTL01XF00731; match to protein family HMM TIGR01760 (780 aa)
 
        0.907
DVU_1105
Uncharacterized protein; Identified by Glimmer2; putative (266 aa)
              0.851
DVU_1103
Baseplate assembly protein, putative; Identified by match to protein family HMM PF04965 (144 aa)
              0.845
DVU_1100
annotation not available (505 aa)
 
          0.835
DVU_1111
Uncharacterized protein; Identified by Glimmer2; putative (561 aa)
 
          0.791
DVU_1110
Uncharacterized protein; Identified by Glimmer2; putative (148 aa)
   
          0.783
DVU_1140
Bacteriophage transposase A protein, putative; Identified by similarity to SP-P07636 (717 aa)
   
          0.759
DVU_1524
Uncharacterized protein; Identified by similarity to GP-13491641 (298 aa)
   
          0.754
DVU_1118
Uncharacterized protein; Identified by similarity to OMNI-NTL03ST1420 (316 aa)
   
          0.750
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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