Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DVU_1104Baseplate assembly protein, putative. (243 aa)    
Predicted Functional Partners:
DVU_1105
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.929
DVU_1103
Baseplate assembly protein, putative; Identified by match to protein family HMM PF04965.
  
    0.842
DVU_1102
Baseplate assembly protein, putative.
       0.782
DVU_2604
Conserved hypothetical protein; Identified by similarity to GP:13186164.
   
    0.748
DVU_1106
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.593
DVU_1107
Tail tape measure protein; Identified by similarity to OMNI:NTL01XF00731; match to protein family HMM TIGR01760.
  
    0.550
DVU_1101
Hypothetical protein; Identified by Glimmer2; putative.
       0.527
DVU_1100
Tail fiber protein, putative.
  
    0.524
DVU_1099
Tail fiber assembly protein, putative.
       0.474
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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