STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1105Hypothetical protein; Identified by Glimmer2; putative. (266 aa)    
Predicted Functional Partners:
DVU_1103
Baseplate assembly protein, putative; Identified by match to protein family HMM PF04965.
  
    0.939
DVU_1104
Baseplate assembly protein, putative.
  
    0.928
DVU_2604
Conserved hypothetical protein; Identified by similarity to GP:13186164.
   
    0.837
DVU_1107
Tail tape measure protein; Identified by similarity to OMNI:NTL01XF00731; match to protein family HMM TIGR01760.
  
    0.822
DVU_1102
Baseplate assembly protein, putative.
       0.781
DVU_2166
Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593.
   
    0.744
DVU_0039
C4-type zinc finger protein, DksA/TraR family; Identified by match to protein family HMM PF01258.
   
    0.596
DVU_2598
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.596
DVU_1106
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.566
DVU_1968
Oxidoreductase, putative.
   
    0.523
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.