Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_1107Tail tape measure protein; Identified by similarity to OMNI:NTL01XF00731; match to protein family HMM TIGR01760. (780 aa)    
Predicted Functional Partners:
DVU_1102
Baseplate assembly protein, putative.
 
     0.848
DVU_1114
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
 
    0.845
DVU_1105
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.823
DVU_1106
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.807
DVU_1120
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1417.
 
    0.742
DVU_2708
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
 
    0.738
DVU_1119
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
     0.699
DVU_2707
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
    0.680
DVU_1139
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP:974770.
  
    0.677
DVU_1122
Portal protein, putative.
 
    0.664
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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