STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1111Hypothetical protein; Identified by Glimmer2; putative. (561 aa)    
Predicted Functional Partners:
DVU_1113
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.801
DVU_1110
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.794
DVU_1114
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
  
    0.774
DVU_1112
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_1115
Conserved hypothetical protein.
  
    0.771
DVU_1118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1420.
  
    0.460
DVU_1117
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.440
DVU_1116
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.438
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.