STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1114Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635. (146 aa)    
Predicted Functional Partners:
DVU_1118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1420.
 
    0.874
DVU_1119
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
  
 0.855
DVU_1120
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1417.
 
    0.855
DVU_1107
Tail tape measure protein; Identified by similarity to OMNI:NTL01XF00731; match to protein family HMM TIGR01760.
 
    0.843
DVU_1122
Portal protein, putative.
 
    0.828
DVU_2707
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
  
 0.819
DVU_1139
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP:974770.
 
    0.810
DVU_2711
Major head subunit, putative; Identified by similarity to SP:Q9T1W1.
 
    0.808
DVU_1140
Bacteriophage transposase A protein, putative; Identified by similarity to SP:P07636.
 
    0.807
DVU_2713
Conserved hypothetical protein.
 
    0.805
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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