Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_1128Lysozyme, putative; Identified by match to protein family HMM PF01464. (221 aa)    
Predicted Functional Partners:
DVU_1129
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1409.
  
    0.906
DVU_1125
Conserved domain protein; Identified by similarity to GP:5531665.
  
    0.795
DVU_1126
Lipoprotein, putative.
  
    0.793
DVU_1127
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.793
DVU_1122
Portal protein, putative.
 
    0.792
DVU_1124
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_1120
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST1417.
 
    0.691
DVU_1123
Conserved domain protein; Identified by similarity to GP:1772508.
  
    0.683
DVU_1132
Conserved hypothetical protein; Identified by similarity to OMNI:NMB0985.
  
    0.658
DVU_1119
Virion morphogenesis protein; Identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641.
 
     0.653
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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