Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_1141Hypothetical protein; Identified by Glimmer2; putative. (143 aa)    
Predicted Functional Partners:
DVU_1142
Transcriptional regulator, putative.
  
    0.642
DVU_1143
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.636
DVU_1139
Bacteriophage DNA transposition B protein, putative; Identified by similarity to GP:974770.
  
    0.488
DVU_1136
Host-nuclease inhibitor protein Gam, putative; Identified by similarity to SP:P06023.
  
    0.487
DVU_1137
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.484
DVU_1138
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.484
DVU_1140
Bacteriophage transposase A protein, putative; Identified by similarity to SP:P07636.
  
    0.479
DVU_1135
Conserved domain protein; Identified by similarity to GP:14277814.
  
    0.471
hupB
DNA-binding protein HU, beta subunit; Identified by similarity to SP:P02346; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.
  
    0.452
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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