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DVU_1183 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1183" - HD domain protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1183HD domain protein; Identified by match to protein family HMM PF01966 (287 aa)    
Predicted Functional Partners:
DVU_1182
Uncharacterized protein; Identified by Glimmer2; putative (304 aa)
 
          0.881
DVU_1181
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277 (356 aa)
 
          0.752
DVU_1180
Uncharacterized protein; Identified by Glimmer2; putative (74 aa)
              0.673
DVU_1184
Uncharacterized protein; Identified by Glimmer2; putative (150 aa)
              0.626
DVU_1185
Colicin V production family protein; Identified by match to protein family HMM PF02674 (159 aa)
              0.450
DVU_1186
MazG family protein; Identified by similarity to OMNI-VC2450; match to protein family HMM PF03819; match to protein family HMM TIGR00444 (267 aa)
              0.409
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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