STRINGSTRING
DVU_1185 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1185" - Colicin V production family protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1185Colicin V production family protein; Identified by match to protein family HMM PF02674 (159 aa)    
Predicted Functional Partners:
DVU_1186
MazG family protein; Identified by similarity to OMNI-VC2450; match to protein family HMM PF03819; match to protein family HMM TIGR00444 (267 aa)
              0.820
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine (462 aa)
   
   
  0.795
purM
Phosphoribosylformylglycinamidine cyclo-ligase; Identified by similarity to SP-P08178; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878 (350 aa)
     
        0.706
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (88 aa)
     
        0.677
DVU_1184
Uncharacterized protein; Identified by Glimmer2; putative (150 aa)
              0.591
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate (225 aa)
   
   
  0.548
DVU_1189
Uncharacterized protein; Identified by similarity to OMNI-VC0624; match to protein family HMM PF01594 (399 aa)
 
        0.536
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA (101 aa)
   
        0.525
DVU_1182
Uncharacterized protein; Identified by Glimmer2; putative (304 aa)
 
          0.522
DVU_1187
Uncharacterized protein; Identified by Glimmer2; putative (274 aa)
              0.500
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (24%) [HD]