Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_1191 | DVU_1194 | DVU_1191 | DVU_1194 | Atp-dependent protease la, putative; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner | Dna polymerase iii subunit delta; Uncharacterized protein; Identified by Glimmer2; putative | 0.805 |
| DVU_1191 | DVU_1195 | DVU_1191 | DVU_1195 | Atp-dependent protease la, putative; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner | annotation not available | 0.731 |
| DVU_1191 | acyP | DVU_1191 | DVU_1192 | Atp-dependent protease la, putative; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner | Acylphosphatase; Identified by match to protein family HMM PF00708 | 0.852 |
| DVU_1191 | leuS | DVU_1191 | DVU_1196 | Atp-dependent protease la, putative; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner | Leucyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family | 0.860 |
| DVU_1191 | radC | DVU_1191 | DVU_1193 | Atp-dependent protease la, putative; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner | Dna repair protein radc; Belongs to the UPF0758 family | 0.887 |
| DVU_1194 | DVU_1191 | DVU_1194 | DVU_1191 | Dna polymerase iii subunit delta; Uncharacterized protein; Identified by Glimmer2; putative | Atp-dependent protease la, putative; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner | 0.805 |
| DVU_1194 | DVU_1195 | DVU_1194 | DVU_1195 | Dna polymerase iii subunit delta; Uncharacterized protein; Identified by Glimmer2; putative | annotation not available | 0.856 |
| DVU_1194 | acyP | DVU_1194 | DVU_1192 | Dna polymerase iii subunit delta; Uncharacterized protein; Identified by Glimmer2; putative | Acylphosphatase; Identified by match to protein family HMM PF00708 | 0.796 |
| DVU_1194 | leuS | DVU_1194 | DVU_1196 | Dna polymerase iii subunit delta; Uncharacterized protein; Identified by Glimmer2; putative | Leucyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family | 0.903 |
| DVU_1194 | radC | DVU_1194 | DVU_1193 | Dna polymerase iii subunit delta; Uncharacterized protein; Identified by Glimmer2; putative | Dna repair protein radc; Belongs to the UPF0758 family | 0.812 |
| DVU_1195 | DVU_1191 | DVU_1195 | DVU_1191 | annotation not available | Atp-dependent protease la, putative; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner | 0.731 |
| DVU_1195 | DVU_1194 | DVU_1195 | DVU_1194 | annotation not available | Dna polymerase iii subunit delta; Uncharacterized protein; Identified by Glimmer2; putative | 0.856 |
| DVU_1195 | acyP | DVU_1195 | DVU_1192 | annotation not available | Acylphosphatase; Identified by match to protein family HMM PF00708 | 0.733 |
| DVU_1195 | leuS | DVU_1195 | DVU_1196 | annotation not available | Leucyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family | 0.857 |
| DVU_1195 | radC | DVU_1195 | DVU_1193 | annotation not available | Dna repair protein radc; Belongs to the UPF0758 family | 0.740 |
| DVU_2250 | ackA | DVU_2250 | DVU_3030 | Acetyl-coa synthetase; Identified by match to protein family HMM PF00501 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction | 0.951 |
| DVU_2250 | acs | DVU_2250 | DVU_0748 | Acetyl-coa synthetase; Identified by match to protein family HMM PF00501 | Acetyl-coa synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA | 0.918 |
| DVU_2250 | acsA | DVU_2250 | DVU_2969 | Acetyl-coa synthetase; Identified by match to protein family HMM PF00501 | Acetoacetyl-coa synthase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA | 0.915 |
| DVU_2250 | acyP | DVU_2250 | DVU_1192 | Acetyl-coa synthetase; Identified by match to protein family HMM PF00501 | Acylphosphatase; Identified by match to protein family HMM PF00708 | 0.900 |
| DVU_2250 | pta | DVU_2250 | DVU_3029 | Acetyl-coa synthetase; Identified by match to protein family HMM PF00501 | Phosphate acetyltransferase; Involved in acetate metabolism | 0.961 |
page 1 of 3
