Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_1246Membrane protein, putative; Identified by similarity to OMNI:NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056. (267 aa)    
Predicted Functional Partners:
DVU_1245
ABC transporter, ATP-binding protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
 0.999
DVU_1244
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470.
 
 0.997
DVU_0611
ABC transporter, ATP-binding protein; Identified by similarity to GP:21109946; match to protein family HMM PF00005.
 0.995
DVU_0610
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470.
 
 0.971
DVU_1243
Conserved hypothetical protein; Identified by similarity to GP:22799047.
 
 
 0.966
DVU_0612
STAS domain protein; Identified by similarity to GP:9106294; match to protein family HMM PF01740; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
  
  
 
0.923
DVU_1242
vacJ lipoprotein, putative; Identified by similarity to SP:P76506; match to protein family HMM PF04333.
 
  
 0.770
DVU_1247
Hypothetical protein; Identified by Glimmer2; putative.
       0.689
argS
arginyl-tRNA synthetase; Identified by similarity to SP:P35868; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.
  
    0.649
DVU_1431
Hpt domain protein/STAS domain protein; Identified by match to protein family HMM PF01627; match to protein family HMM PF01740.
   
 
 0.630
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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