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DVU_1247 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1247" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1247Uncharacterized protein; Identified by Glimmer2; putative (273 aa)    
Predicted Functional Partners:
argS
Arginine--tRNA ligase; Identified by similarity to SP-P35868; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456 (551 aa)
              0.847
DVU_1194
Uncharacterized protein; Identified by Glimmer2; putative (368 aa)
 
      0.784
DVU_1245
ABC transporter, ATP-binding protein; Identified by similarity to SP-P45393; match to protein family HMM PF00005 (274 aa)
   
        0.770
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
     
 
  0.767
DVU_1246
Membrane protein, putative; Identified by similarity to OMNI-NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056 (267 aa)
              0.764
DVU_1952
Uncharacterized protein; Identified by Glimmer2; putative (231 aa)
   
          0.759
DVU_1875
DafA protein; Identified by similarity to SP-P77527 (105 aa)
 
          0.758
DVU_1683
Uncharacterized protein; Identified by Glimmer2; putative (578 aa)
   
          0.757
DVU_2223
Uncharacterized protein; Identified by Glimmer2; putative (114 aa)
   
          0.756
DVU_0602
Uncharacterized protein; Identified by Glimmer2; putative (120 aa)
   
          0.752
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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