STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1256Identified by match to protein family HMM PF01075. (362 aa)    
Predicted Functional Partners:
DVU_1956
Identified by match to protein family HMM PF01075.
  
    0.722
DVU_3361
ADP-heptose synthase, putative; Identified by similarity to GP:882153; match to protein family HMM PF00294.
 
  
 0.720
DVU_0144
Cytidyltransferase-related domain protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
  
 0.698
DVU_0998
Identified by match to protein family HMM PF01075.
  
     0.675
DVU_0411
Identified by match to protein family HMM PF01075.
  
     0.648
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
 
   0.586
gltA
Glutamate synthase, small subunit; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01316.
   
  
 0.564
DVU_1054
Hydrolase, HAD-superfamily, subfamily IIIA; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
 
  
 0.557
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
   
 0.541
DVU_0431
Ech hydrogenase, subunit EchD, putative; Identified by similarity to GP:3005970.
   
   0.526
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.