Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
DVU_1271General secretion pathway protein F, putative; Identified by similarity to GP:4139238; match to protein family HMM PF00482. (408 aa)    
Predicted Functional Partners:
DVU_1272
General secretion pathway protein E, putative; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 0.999
DVU_1273
Bacterial type II/III secretion system protein; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958.
 
 
 0.976
pppA
Type IV prepilin-like proteins leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.944
DVU_1266
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.852
DVU_1268
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.833
DVU_1276
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.832
DVU_1270
Twitching motility protein; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
  
 0.825
DVU_1267
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.822
DVU_1262
Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
  
 0.818
DVU_3257
DNA internalization-related competence protein ComEC/Rec2; Identified by similarity to SP:P39695; match to protein family HMM TIGR00360.
  
  
 0.818
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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