Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DVU_1276Hypothetical protein; Identified by Glimmer2; putative. (639 aa)    
Predicted Functional Partners:
DVU_1273
Bacterial type II/III secretion system protein; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958.
  
 
 0.890
DVU_1271
General secretion pathway protein F, putative; Identified by similarity to GP:4139238; match to protein family HMM PF00482.
  
 
 0.832
DVU_1272
General secretion pathway protein E, putative; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.830
DVU_1275
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.826
DVU_1274
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.706
DVU_2326
Conserved domain protein; Identified by similarity to GP:3978519.
  
 
 0.706
DVU_3257
DNA internalization-related competence protein ComEC/Rec2; Identified by similarity to SP:P39695; match to protein family HMM TIGR00360.
      
 0.508
pppA
Type IV prepilin-like proteins leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.460
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
     
 0.420
DVU_1277
Hypothetical protein; Identified by Glimmer2; putative.
       0.419
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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