STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1289Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. (536 aa)    
Predicted Functional Partners:
DVU_1288
Cytochrome c family protein; Identified by similarity to OMNI:AF0503.
 
    0.992
DVU_1287
Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037.
 
  
 0.988
DVU_1290
Nitrate reductase, gamma subunit, putative; Identified by match to protein family HMM PF02665.
 
 
 0.980
DVU_1286
Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916.
 
  
 0.963
DVU_1291
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.917
dsvC
Dissimilatory sulfite reductase, gamma subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria; Belongs to the DsrC/TusE family.
 
 0.913
dsvA
Dissimilatory sulfite reductase alpha subunit; Part of the complex that catalyzes the reduction of sulfite to sulfide. The alpha and beta subunits may have arisen by gene duplication. They both bind 2 iron-sulfur clusters, but the alpha subunit seems to be catalytically inactive, due to substitutions along the putative substrate access channel, and because it binds sirohydrochlorin (the dematallated form of siroheme) instead of siroheme.
 
 
 0.906
dvsB
Dissimilatory sulfite reductase beta subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria.
 
 
 0.905
DVU_0752
Amino acid ABC transporter, amino acid-binding protein; Identified by match to protein family HMM PF00497.
   
    0.738
aprA
Adenylyl-sulphate reductase, alpha subunit; Identified by similarity to GP:7109235; match to protein family HMM TIGR02061.
 
  
 0.696
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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