Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_1292Hypothetical protein; Identified by Glimmer2; putative. (57 aa)    
Predicted Functional Partners:
DVU_1293
Hypothetical protein; Identified by Glimmer2; putative.
       0.752
DVU_1291
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.658
DVU_1290
Nitrate reductase, gamma subunit, putative; Identified by match to protein family HMM PF02665.
  
    0.539
DVU_1287
Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037.
  
    0.535
DVU_1289
Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037.
  
    0.535
DVU_1288
Cytochrome c family protein; Identified by similarity to OMNI:AF0503.
  
    0.533
DVU_1286
Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916.
  
    0.528
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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