STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmCLarge subunit ribosomal protein l29; Belongs to the universal ribosomal protein uL29 family (61 aa)    
Predicted Functional Partners:
rpsO
Small subunit ribosomal protein s15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA
   
 
 0.999
rplS
Large subunit ribosomal protein l19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
   
 
 0.999
rpsP
Small subunit ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family
   
 
 0.999
rpsB
Small subunit ribosomal protein s2; Belongs to the universal ribosomal protein uS2 family
  
 
 0.999
rplU
Large subunit ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20
   
 
 0.999
rpmA
Large subunit ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family
   
 
 0.999
rpsF
Small subunit ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA
  
 
 0.999
rpsR
Small subunit ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
   
 
 0.999
rplI
Large subunit ribosomal protein l9; Binds to the 23S rRNA
   
 
 0.999
rpmH
Large subunit ribosomal protein l34; Belongs to the bacterial ribosomal protein bL34 family
   
 
 0.999
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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